Current environments
Tip
Contact Secretariat System Administrators with HPC Questions!
vshanka@clemson.edu,jopoole@clemson.edu,madonay@clemson.edu
Contact IHG Research Cores with Research Questions!
ihgcores@clemson.edu
This is a table of cluster-wide environments on Secretariat.
Attention
This list is updated only periodically. For a full, current list, log in to Secretariat and run the following commands:
source /opt/ohpc/pub/Software/mamba-rocky/etc/profile.d/conda.sh
source /opt/ohpc/pub/Software/mamba-rocky/etc/profile.d/mamba.sh
mamba env list
Environment |
|---|
Admixfrog |
CADD_test |
IQ-Tree |
JO |
LDBlockShow |
RNAvigate |
alpha_diversity |
argweaver_d |
bic_flows |
conda_pack |
eigensoft |
exon_skipping |
fastqwiper |
flask |
gcc9_libstdc6 |
humann_3.9_pip |
iJulia |
justortho |
manta |
masurca |
mirdeep2 |
msprime |
multiqc |
nextflow |
nextflow_23.04.1 |
notebook_env |
notebook_env_backup |
ood_env |
pandas |
pcangsd |
pggb |
picrust2 |
plotly |
pod5 |
pyFasta |
pysam |
pytorch_idebnat |
pytorch_test |
pyvcf |
qualimap_angsd |
r-reticulate |
r_asc_seurat |
rapids-23.04 |
rfmix2 |
ribotaper |
rmats |
rustenv |
s3-tree |
sailfish |
samtools |
seqkit |
seqtk |
shapeit4 |
snakemake |
sniffles2 |
spipe |
spyder-env |
survivor |
trimgalore |
vep |
vs_emacs |
List last updated: 11 November 2025.